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Selected Publications

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  • Lee, P. K. H.†, D. Cheng†, K. A. West, L. Alvarez-Cohen, and J. He. 2013. Isolation of two new Dehalococcoides mccartyi strains with dissimilar dechlorination functions and their characterization by comparative genomics via microarray analysis. Environ. Microbiol. DOI: 10.1111/1462-2920.12099. †Authors contributed equally.

  • West, K. A., P. K. H. Lee, D. R. Johnson, S. H. Zinder, and L. Alvarez-Cohen. 2013. Global gene expression of Dehalococcoides within a robust dynamic TCE-dechlorinating community under conditions of periodic substrate supply. Biotechnol. Bioeng. 110: 1333-1341.

  • Brisson, V. L., K. A. West, P. K. H. Lee, S. G. Tringe, E. L. Brodie, and L. Alvarez-Cohen. 2012. Metagenomic analysis of a stable trichloroethene-degrading microbial community. ISME J. 6: 1702-1714.

  • Lee, P. K. H., B. D. Dill, T. S. Louie, M. Shah, N. C. VerBerkmoes, G. L. Andersen, S. H. Zinder, and L. Alvarez-Cohen. 2012. Global transcriptomic and proteomic responses of Dehalococcoides ethenogenes strain 195 to fixed nitrogen limitation. Appl. Environ. Microbiol. 78: 1424-1436.
  • Lee, P. K. H., F. Warnecke, E. L. Brodie, T. W. Macbeth, M. E. Conrad, G. L. Andersen, and L. Alvarez-Cohen. 2012. Phylogenetic microarray analysis of a microbial community performing reductive dechlorination at a TCE-contaminated site. Environ. Sci. Technol. 46: 1044-1054.
  • Men, Y., H. Feil, N. C. VerBerkmoes, M. B. Shah, D. R. Johnson, P. K. H. Lee, K. A. West, S. H. Zinder, G. L. Andersen, and L. Alvarez-Cohen. 2012. Sustainable syntrophic growth of Dehalococcoides ethenogenes strain 195 with Desulfovibrio vulgaris Hildenborough and Methanobacterium congolense: global transcriptomic and proteomic analyses. ISME J. 6: 410-421.
  • Lee, P. K. H., D. Cheng, P. Hu, K. A. West, G. J. Dick, E. L. Brodie, G. L. Andersen, S. H. Zinder, J. He, and L. Alvarez-Cohen. 2011. Comparative genomics of two newly isolated Dehalococcoides strains and an enrichment using a genus microarray. ISME J. 5: 1014-1024.
  • Lee, P. K. H., J. He, S. H. Zinder, and L. Alvarez-Cohen. 2009. Evidence for nitrogen fixation by Dehalococcoides ethenogenes strain 195. Appl. Environ. Microbiol. 75: 7551-7555.
  • Fan, C., P. K. H. Lee, W. J. Ng, L. Alvarez-Cohen, E. L. Brodie, G. L. Andersen, and J. He. 2009. Influence of trace erythromycin and erythromycin-H2O on carbon and nutrients removal and on resistance selection in sequencing batch reactors (SBRs). Appl. Microbiol. Biotechnol. 85: 185-195.
  • Lee, P. K. H., T. W. Macbeth, K. S. Sorenson, Jr., R. A. Deeb, and L. Alvarez-Cohen. 2008. Quantifying genes and transcripts to assess the in situ physiology of Dehalococcoides spp. in a trichloroethene-contaminated groundwater site. Appl. Environ. Microbiol. 74: 2728-2739.
  • West, K. A., D. R. Johnson, P. Hu, T. Z. DeSantis, E. L. Brodie, P. K. H. Lee, H. Feil, G. L. Andersen, S. H. Zinder, and L. Alvarez-Cohen. 2008. Comparative genomics of Dehalococcoides ethenogenes 195 and a Dehalococcoides-containing enrichment culture. Appl. Environ. Microbiol. 74: 3533-3540.
  • Lee, P. K. H., M. E. Conrad, and L. Alvarez-Cohen. 2007. Stable carbon isotope fractionation of chloroethenes by dehalorespiring isolates. Environ. Sci. Technol. 41: 4277-4285.
  • He, J., V. F. Holmes, P. K. H. Lee, and L. Alvarez-Cohen. 2007. Influence of vitamin B12 and cocultures on the growth of Dehalococcoides isolates in defined medium. Appl. Environ. Microbiol. 73: 2847-2853.
  • Lee, P. K. H., D. R. Johnson, V. F. Holmes, J. He, and L. Alvarez-Cohen. 2006. Reductive dehalogenase gene expression as a biomarker for physiological activity of Dehalococcoides spp. Appl. Environ. Microbiol. 72: 6161-6168.
  • Holmes, V. F., J. He, P. K. H. Lee, and L. Alvarez-Cohen. 2006. Discrimination of multiple Dehalococcoides strains in a trichloroethene enrichment by quantification of their reductive dehalogenase genes. Appl. Environ. Microbiol. 72: 5877-5883.
  • Johnson, D. R., P. K. H. Lee, V. F. Holmes, A. C. Fortin, and L. Alvarez-Cohen. 2005. Transcriptional expression of the tceA gene in a Dehalococcoides-containing microbial enrichment. Appl. Environ. Microbiol. 71: 7145-7151.
  • Johnson, D. R., P. K. H. Lee, V. F. Holmes, and L. Alvarez-Cohen. 2005. An internal reference technique for accurately quantifying specific mRNAs by real-time PCR with application to the tceA reductive dehalogenase gene. Appl. Environ. Microbiol. 71: 3866-3871.